genome.fa.s23651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023651.1 Corchorus olitorius cultivar O-4 contig23684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65397

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50--250	41	4.9	41	84	8	266	32	15	14	37	1.88
31--250	123	1.8	121	89	5	345	32	16	14	37	1.88
4033--4081	21	2.3	21	82	6	55	42	14	28	14	1.84
6728--6760	8	4.1	8	96	0	57	33	12	3	51	1.54
9046--9095	26	1.9	26	87	0	73	54	10	20	16	1.70
12379--12618	52	4.8	50	86	8	282	40	15	15	30	1.87
12379--12618	102	2.4	99	83	12	289	40	15	15	30	1.87
12535--12620	43	2.2	36	78	21	95	37	12	16	33	1.87
19360--19393	11	3.1	11	91	0	59	41	17	0	41	1.50
21939--22012	36	2.1	36	100	0	148	32	27	8	32	1.86
24348--24443	36	2.7	35	80	6	111	51	7	26	15	1.69
25298--26091	59	13.5	59	89	2	1161	25	14	18	41	1.88
25298--26091	235	3.4	236	88	2	1154	25	14	18	41	1.88
26342--26439	27	3.6	27	84	6	144	18	22	24	34	1.96
33403--33444	18	2.3	18	80	8	50	14	4	26	54	1.59
33663--33690	13	2.2	13	100	0	56	14	0	14	71	1.15
34482--34674	41	4.7	41	81	10	223	31	15	15	37	1.88
37087--37119	17	1.9	17	100	0	66	21	24	36	18	1.95
44245--44273	2	14.5	2	100	0	58	48	0	0	51	1.00
46162--46444	22	12.6	22	69	16	102	36	9	18	35	1.83
46258--46357	43	2.3	43	84	5	119	40	7	14	39	1.72
46298--46418	43	2.7	44	77	12	122	37	8	21	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46501--46663	66	2.5	66	80	5	165	33	11	13	41	1.81
46536--46627	44	2.1	44	87	0	130	34	10	16	38	1.84
46500--46663	22	7.7	21	76	13	113	33	11	14	40	1.81
47043--47257	70	3.1	70	97	0	412	25	6	22	45	1.76
47748--47820	38	1.9	38	91	0	119	24	10	12	52	1.71
51197--51230	8	4.6	7	86	13	50	32	0	41	26	1.56
51197--51230	15	2.3	15	90	10	52	32	0	41	26	1.56
60146--60184	6	6.5	6	90	0	60	15	12	53	17	1.72
60552--60638	32	2.7	32	92	0	138	33	22	18	25	1.97
60816--60845	12	2.4	13	88	11	53	66	13	6	13	1.43
63425--63449	11	2.3	11	100	0	50	64	28	0	8	1.22
63802--63844	21	2.0	22	90	4	70	65	6	2	25	1.30

Tables:   1

The End!