Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023652.1 Corchorus olitorius cultivar O-4 contig23685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12578
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Found at i:4874 original size:16 final size:17

Alignment explanation


    Indices: 4848--4879  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       4838 AGTGCAAATT

                             
       4848 AAAATAGAAAAATAAAG
          1 AAAATAGAAAAATAAAG

                            
       4865 AAAA-AGAAAAATAAA
          1 AAAATAGAAAAATAAA

       4880 ACGCAATTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09


Consensus pattern (17 bp):   
AAAATAGAAAAATAAAG
Done.