Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023653.1 Corchorus olitorius cultivar O-4 contig23686, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28124

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1048--1077
12
2.4
13
88
11
53
66
13
6
13
1.43
2647--2732
32
2.7
32
90
3
129
33
25
17
23
1.96
7602--7670
32
2.2
32
81
5
77
43
21
11
23
1.85
7648--8208
30
18.1
30
87
5
719
50
17
11
20
1.77
7648--8208
61
9.1
61
88
5
736
50
17
11
20
1.77
8167--8250
39
2.2
40
85
8
111
53
16
10
19
1.71
8277--8317
20
2.0
20
85
0
55
31
26
21
19
1.97
8805--9277
36
13.5
35
83
7
534
42
19
19
17
1.89
9146--9200
26
2.2
25
86
3
74
38
23
23
14
1.92
9083--9269
96
1.9
98
87
2
279
42
22
18
16
1.89
9185--9301
35
3.3
34
74
11
110
42
22
17
17
1.89
11270--11298
2
14.5
2
100
0
58
51
0
0
48
1.00
18287--18359
28
2.6
28
85
6
96
17
15
23
43
1.87
23973--24021
13
3.8
13
82
15
57
42
10
8
38
1.68
23974--24021
14
3.6
14
83
8
57
41
10
8
39
1.69
25531--25667
70
2.0
70
89
0
211
18
24
20
36
1.95
25531--25916
36
11.1
36
77
6
314
19
19
17
43
1.89
25799--25852
26
2.1
26
89
0
81
20
20
16
42
1.89
25719--25935
98
2.2
98
86
0
317
20
17
18
44
1.87
26221--27274
30
35.1
30
90
0
1556
20
13
19
46
1.83
27793--27865
28
2.7
27
81
8
85
16
15
26
42
1.87

Tables:   1

The End!