Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023660.1 Corchorus olitorius cultivar O-4 contig23693, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8106
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:1848 original size:21 final size:21

Alignment explanation


    Indices: 1805--1856  Score: 68
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1795 GGCTTGGAAT

                *            **  
       1805 GGTGATGGCACGGGCATGGCC
          1 GGTGGTGGCACGGGCATAACC

                           *     
       1826 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

                      
       1847 GGTGGTGGCA
          1 GGTGGTGGCA

       1857 TGGTAATGGG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.13, C:0.21, G:0.48, T:0.17


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC

Found at i:4759 original size:15 final size:16

Alignment explanation


    Indices: 4741--4780  Score: 73
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       4731 AGAGGTTGAC

                            
       4741 AGAAAACAATTAAA-T
          1 AGAAAACAATTAAACT

                            
       4756 AGAAAACAATTAAACT
          1 AGAAAACAATTAAACT

                     
       4772 AGAAAACAA
          1 AGAAAACAA

       4781 AACAAAGTAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   14  0.58
  16   10  0.42

ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.