Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023669.1 Corchorus olitorius cultivar O-4 contig23702, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14684

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1691--1724
15
2.3
15
100
0
68
14
0
26
58
1.36
5920--5993
28
2.7
27
76
15
80
40
13
21
24
1.89
8904--8994
30
3.0
30
93
1
155
38
14
14
32
1.86
10072--10147
39
1.9
39
83
0
98
43
15
15
25
1.86
10124--10235
27
4.1
27
82
6
145
43
14
17
24
1.86
10218--10294
40
1.9
40
86
5
111
36
11
20
31
1.89
10223--10318
40
2.4
39
82
3
102
36
12
19
31
1.89
10324--10375
27
1.9
27
88
0
77
40
9
23
26
1.85
10347--10495
40
3.7
40
92
0
226
38
12
18
30
1.88
10179--10523
146
2.3
147
83
4
403
39
12
19
28
1.88
10467--10592
28
4.5
28
88
1
173
42
9
24
23
1.84
10599--10677
27
2.9
27
81
10
99
37
11
22
27
1.89
10498--10737
93
2.6
94
78
9
256
40
9
24
25
1.85
10637--10777
66
2.1
67
82
1
167
39
9
21
29
1.86
10686--10737
27
1.9
27
84
0
68
42
5
23
28
1.77
10709--10801
40
2.3
40
85
3
116
37
9
19
33
1.84
13495--13566
26
2.7
27
80
4
74
19
12
27
40
1.88

Tables:   1

The End!