Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023675.1 Corchorus olitorius cultivar O-4 contig23708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3839
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:2776 original size:14 final size:15

Alignment explanation


    Indices: 2757--2786  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2747 CAATCAAAGC

                           
       2757 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       2771 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       2786 A
          1 A

       2787 TTAAAATGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Found at i:3181 original size:22 final size:21

Alignment explanation


    Indices: 3138--3189  Score: 68
    Period size: 22  Copynumber: 2.4  Consensus size: 21

       3128 GGCTTGGAAT

                          *      
       3138 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGAATGGCC

                *                 
       3159 GGTGGTGGCACGGTGAATGGCC
          1 GGTGATGGCACGG-GAATGGCC

               *     
       3181 GGTAATGGC
          1 GGTGATGGC

       3190 TTGGTAGTGG


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  21   12  0.46
  22   14  0.54

ACGTcount: A:0.15, C:0.19, G:0.48, T:0.17


Consensus pattern (21 bp):   
GGTGATGGCACGGGAATGGCC
Done.