Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023681.1 Corchorus olitorius cultivar O-4 contig23714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92994

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6519--6548
5
6.0
5
92
0
51
0
43
0
56
0.99
6696--6744
16
3.2
15
77
11
55
12
20
34
32
1.90
11596--11627
16
1.9
17
93
6
57
9
9
0
81
0.88
22034--22075
16
2.6
16
84
0
57
9
21
33
35
1.86
23822--23865
14
3.1
15
81
18
58
2
45
0
52
1.13
24501--24545
21
2.1
21
95
0
81
28
4
15
51
1.63
25446--25502
21
2.6
23
71
15
57
50
14
3
31
1.59
26088--26130
16
2.6
16
85
10
52
51
2
0
46
1.13
28149--28230
31
2.7
31
86
5
114
23
18
8
50
1.74
32119--32143
13
1.9
13
100
0
50
32
20
16
32
1.94
32844--33299
50
9.3
50
83
7
587
24
27
12
36
1.91
32980--33059
23
3.3
23
66
19
63
18
30
11
40
1.86
33220--33372
73
2.1
73
95
0
270
20
28
12
37
1.89
33270--33422
23
6.3
23
68
19
96
19
29
12
38
1.88
33293--33564
50
5.4
50
92
0
436
23
26
12
38
1.90
33184--33422
123
1.9
123
94
0
424
23
27
12
37
1.91
43494--43573
29
2.7
29
82
3
88
28
21
10
40
1.85
53476--53586
51
2.1
51
82
12
127
23
8
10
57
1.59
53575--53650
25
2.9
26
88
9
102
46
6
7
39
1.59
53593--53652
25
2.4
25
97
0
111
51
6
3
38
1.45
56526--56569
21
2.1
21
82
0
52
11
43
27
18
1.84
62395--62570
4
44.5
4
68
17
91
26
7
0
65
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62395--62642
8
31.9
8
67
21
93
25
10
1
62
1.34
62396--62563
43
3.8
44
85
9
177
26
7
0
64
1.24
62389--62573
70
2.6
71
87
9
268
25
7
0
66
1.21
62403--62578
25
7.2
25
74
17
129
27
7
0
64
1.24
62395--62573
46
4.0
46
82
11
171
26
7
0
65
1.23
67361--67418
24
2.3
26
85
8
77
62
3
12
22
1.45
67400--67653
19
13.4
19
72
17
133
66
0
7
25
1.23
67463--67657
37
5.3
37
77
16
176
64
0
9
25
1.27
67457--67634
82
2.3
75
87
8
241
66
0
8
24
1.23
67400--67637
4
61.5
4
66
17
103
66
0
6
25
1.21

Tables:   1

The End!