Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023689.1 Corchorus olitorius cultivar O-4 contig23722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15912
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Found at i:557 original size:3 final size:3

Alignment explanation


    Indices: 549--583  Score: 63
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        539 TTTAACTAGT

                                                           
        549 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

        584 ATATTATGCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   29  0.94

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
TAA

Found at i:11462 original size:14 final size:15

Alignment explanation


    Indices: 11443--11473  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

      11433 AGTTTCTGCG

                           
      11443 TTTTTT-GTTTTTTT
          1 TTTTTTAGTTTTTTT

                           
      11457 TTTTTTAGTTTTTTT
          1 TTTTTTAGTTTTTTT

              
      11472 TT
          1 TT

      11474 CTGTTCAGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.38
  15   10  0.62

ACGTcount: A:0.03, C:0.00, G:0.06, T:0.90


Consensus pattern (15 bp):   
TTTTTTAGTTTTTTT
Done.