Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023695.1 Corchorus olitorius cultivar O-4 contig23728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5246
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1761 original size:57 final size:57

Alignment explanation


    Indices: 1686--1815  Score: 251
    Period size: 57  Copynumber: 2.3  Consensus size: 57

       1676 TATCATGCTA

                         *                                           
       1686 TAAATCAATCAATCAAATAAAACTTTCTTAAAATTCTAAGTATTAATCAATCATAAT
          1 TAAATCAATCAATTAAATAAAACTTTCTTAAAATTCTAAGTATTAATCAATCATAAT

                                                                     
       1743 TAAATCAATCAATTAAATAAAACTTTCTTAAAATTCTAAGTATTAATCAATCATAAT
          1 TAAATCAATCAATTAAATAAAACTTTCTTAAAATTCTAAGTATTAATCAATCATAAT

                            
       1800 TAAATCAATCAATTAA
          1 TAAATCAATCAATTAA

       1816 TATATGCATA


Statistics
Matches: 72,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  57   72  1.00

ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35


Consensus pattern (57 bp):   
TAAATCAATCAATTAAATAAAACTTTCTTAAAATTCTAAGTATTAATCAATCATAAT

Done.