Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023696.1 Corchorus olitorius cultivar O-4 contig23729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29726

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
149--237
15
5.8
15
78
5
88
26
20
31
21
1.98
149--224
31
2.5
31
88
0
107
25
19
32
22
1.97
166--260
46
2.1
46
89
0
145
28
21
26
24
1.99
739--835
45
2.2
45
94
1
169
35
6
21
37
1.79
1342--1606
41
6.4
41
88
2
359
30
14
18
36
1.90
1351--1606
123
2.1
125
92
2
426
30
14
17
37
1.90
1702--1736
16
2.2
16
100
0
70
11
25
17
45
1.81
6677--6734
16
3.6
16
76
17
57
51
1
1
44
1.21
6679--6775
11
9.6
10
74
22
55
46
2
1
50
1.20
8021--8184
87
1.9
87
83
7
217
35
7
4
51
1.53
9391--9579
93
2.0
93
97
0
360
17
14
16
50
1.78
12198--12235
11
3.5
11
92
3
60
92
2
0
5
0.47
12197--12243
10
4.7
10
87
10
69
87
4
0
8
0.67
26599--26636
16
2.5
15
84
12
51
47
15
10
26
1.78
26863--26933
26
2.7
27
82
8
83
42
26
14
16
1.87
29432--29519
31
2.8
31
80
10
99
17
13
6
62
1.52
29475--29509
18
1.9
18
88
0
52
17
8
5
68
1.35
29534--29602
31
2.4
28
85
7
84
31
17
10
40
1.83
29534--29613
28
2.7
29
80
7
81
28
18
10
42
1.83

Tables:   1

The End!