Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023697.1 Corchorus olitorius cultivar O-4 contig23730, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85212

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1070--1149
31
2.7
29
82
3
88
45
7
17
30
1.76
4000--4053
27
2.0
27
92
7
92
37
16
12
33
1.87
7595--7966
87
4.3
87
90
0
564
34
18
25
21
1.96
12524--13046
276
1.9
272
88
2
796
35
17
12
34
1.88
18844--19453
204
3.0
204
93
5
1069
44
9
10
35
1.71
19868--19914
6
7.5
6
90
9
76
51
0
14
34
1.43
19868--19914
20
2.5
19
93
6
78
51
0
14
34
1.43
19874--19914
14
3.1
14
93
6
68
51
0
14
34
1.43
22957--22998
7
6.1
7
97
2
77
45
0
26
28
1.54
26159--26415
125
2.0
127
88
7
387
49
1
10
38
1.46
30233--30283
19
2.7
20
76
11
63
49
3
0
47
1.20
44296--44329
18
1.9
18
88
5
52
26
0
0
73
0.83
44989--45086
32
3.1
32
86
1
126
39
33
10
16
1.82
45204--45303
31
3.3
31
71
5
96
34
19
11
36
1.87
60361--60497
70
1.9
71
97
1
258
22
10
21
45
1.83
62621--62650
11
2.7
11
100
0
60
0
0
6
93
0.35
74348--74389
19
2.3
19
80
15
52
30
21
0
47
1.51
74348--74403
16
3.2
18
76
16
55
30
25
0
44
1.54
74573--74674
32
3.2
31
84
9
134
17
36
37
8
1.81
75221--75259
14
2.8
13
85
11
51
28
0
10
61
1.28
76853--76928
23
3.4
22
77
21
86
78
0
18
2
0.86
76843--76928
5
16.8
5
80
12
79
77
0
19
2
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82198--82251
18
3.0
18
97
0
99
20
11
0
68
1.19
84732--84788
19
3.0
19
75
17
64
59
8
1
29
1.38

Tables:   1

The End!