Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023698.1 Corchorus olitorius cultivar O-4 contig23731, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27


Found at i:328 original size:2 final size:2

Alignment explanation


    Indices: 321--350  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        311 GGATTCTAGA

                                                        
        321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        351 GTTGATCCAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:644 original size:16 final size:16

Alignment explanation


    Indices: 623--660  Score: 67
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        613 TTCTCTCTAG

                           *
        623 AATTCAGAGAATTCTT
          1 AATTCAGAGAATTCTC

                            
        639 AATTCAGAGAATTCTC
          1 AATTCAGAGAATTCTC

                  
        655 AATTCA
          1 AATTCA

        661 CTAAGGAGAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34


Consensus pattern (16 bp):   
AATTCAGAGAATTCTC
Done.