Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023699.1 Corchorus olitorius cultivar O-4 contig23732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41034

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11057--11121
3
21.7
3
100
0
130
33
0
0
66
0.92
11232--11517
146
2.0
140
90
5
448
37
12
6
43
1.69
12364--12405
21
2.0
21
85
0
57
38
26
23
11
1.90
14487--14516
3
10.0
3
100
0
60
33
0
0
66
0.92
18937--19195
126
2.1
124
85
5
344
49
1
10
38
1.48
21569--21753
93
2.0
93
92
0
307
32
14
2
50
1.56
24259--24299
12
3.6
12
83
9
59
34
12
0
53
1.38
24259--24288
6
5.0
6
91
0
51
33
13
0
53
1.40
24386--24626
135
1.9
129
85
10
341
35
12
2
50
1.51
29620--29665
22
2.1
22
91
0
74
21
15
10
52
1.73
32216--32241
6
4.3
6
100
0
52
34
0
15
50
1.45
33035--33079
22
2.0
22
83
8
56
35
8
13
42
1.75

Tables:   1

The End!