Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023700.1 Corchorus olitorius cultivar O-4 contig23733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69119

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
580--621
15
2.7
15
96
3
75
11
7
14
66
1.43
1045--1125
36
2.3
35
82
8
92
41
6
11
40
1.65
5801--5826
10
2.6
10
100
0
52
0
19
38
42
1.51
11607--11644
15
2.4
16
91
4
60
15
2
13
68
1.32
12547--12581
18
1.9
18
88
11
54
51
5
11
31
1.61
12790--12881
36
2.6
35
91
1
139
56
14
8
20
1.64
12865--12912
25
1.9
25
95
0
87
43
12
14
29
1.82
14436--14545
51
2.2
51
91
3
177
30
16
7
46
1.74
17679--17758
41
1.9
42
97
2
153
20
6
20
53
1.66
17674--17765
41
2.3
42
88
7
138
18
5
20
55
1.62
19072--19130
2
32.5
2
80
19
76
54
0
0
45
0.99
19072--19130
7
8.4
7
87
12
86
54
0
0
45
0.99
29395--29482
44
2.0
44
97
0
167
40
12
20
26
1.88
29488--29522
17
2.1
17
100
0
70
45
5
25
22
1.74
37159--37191
12
2.8
12
95
0
57
6
15
0
78
0.93
37269--37772
252
2.0
252
94
0
884
26
19
17
36
1.94
38850--38893
13
3.3
13
78
6
52
11
4
11
72
1.25
38903--38948
5
9.4
5
95
2
76
2
0
15
82
0.76
39602--39641
21
1.9
21
85
10
55
17
12
2
67
1.33
40223--40303
38
2.1
38
90
0
126
41
4
13
39
1.66
61074--61108
18
1.9
18
94
0
61
5
25
14
54
1.62
66487--66539
25
2.1
25
96
0
97
37
11
5
45
1.64

Tables:   1

The End!