Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023703.1 Corchorus olitorius cultivar O-4 contig23736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3085
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33


Found at i:1217 original size:12 final size:13

Alignment explanation


    Indices: 1199--1228  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       1189 GTTTTCTTTA

                         
       1199 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                         
       1212 -TTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
       1224 ATTTT
          1 ATTTT

       1229 AATTGCTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG
Done.