Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023707.1 Corchorus olitorius cultivar O-4 contig23740, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5627
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:5035 original size:36 final size:37

Alignment explanation


    Indices: 4974--5045  Score: 101
    Period size: 36  Copynumber: 2.0  Consensus size: 37

       4964 GCCAGGCCTG

                                *        *       
       4974 GCGCGGGCCAGCGCATGGCATAGCGCCCAGGCTTGGC
          1 GCGCGGGCCAGCGCATGGCACAGCGCCCAAGCTTGGC

                               *      *         
       5011 GCGCGGGCCAGC-CATGGCCCAGCGCTCAAGCTTGG
          1 GCGCGGGCCAGCGCATGGCACAGCGCCCAAGCTTGG

       5046 GTCCCAAGCC


Statistics
Matches: 31,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  36   19  0.61
  37   12  0.39

ACGTcount: A:0.14, C:0.36, G:0.39, T:0.11


Consensus pattern (37 bp):   
GCGCGGGCCAGCGCATGGCACAGCGCCCAAGCTTGGC
Done.