Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023708.1 Corchorus olitorius cultivar O-4 contig23741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39784

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3892--3955
28
2.3
29
81
7
71
40
14
17
28
1.88
4851--4933
36
2.3
35
89
8
123
6
37
42
14
1.70
4973--4997
13
1.9
13
100
0
50
0
8
4
88
0.64
4992--5018
12
2.2
12
100
0
54
0
22
0
77
0.76
4973--5017
15
2.9
15
86
3
54
0
15
2
82
0.77
6831--6877
21
2.2
22
81
11
53
51
6
0
42
1.27
7078--7105
2
14.0
2
100
0
56
50
0
0
50
1.00
7679--7764
40
2.2
40
89
0
127
13
40
40
4
1.66
14635--14675
2
21.0
2
95
5
75
48
0
0
51
1.00
14816--14847
2
16.0
2
93
0
55
46
0
3
50
1.17
17516--17540
1
25.0
1
100
0
50
100
0
0
0
0.00
21966--22016
24
2.1
25
85
3
68
17
5
5
70
1.28
25152--25210
30
2.0
30
93
0
100
20
16
8
54
1.68
29475--29514
21
1.9
21
84
0
53
17
25
25
32
1.97
30551--30589
12
3.3
12
82
3
53
17
0
0
82
0.68
32946--32993
21
2.6
19
81
18
57
25
0
41
33
1.55

Tables:   1

The End!