Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023723.1 Corchorus olitorius cultivar O-4 contig23756, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5538
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:1653 original size:47 final size:44

Alignment explanation


    Indices: 1572--1664  Score: 107
    Period size: 47  Copynumber: 2.0  Consensus size: 44

       1562 ACACAAAATC

                            *                            
       1572 AAAAATTTTTTTTTTAGAAAAAAAACGCAAAAAGAAAAAGAGAAA
          1 AAAAATTTTTTTTTTAAAAAAAAAACGC-AAAAGAAAAAGAGAAA

                                                  **        
       1617 AAAAATTTTTTTTTTTACAAAATTAAAAACGC-AAAGACCAAGAGAAA
          1 AAAAA-TTTTTTTTTTA-AAAA--AAAAACGCAAAAGAAAAAGAGAAA

             
       1664 A
          1 A

       1665 TTCTCAGGAT


Statistics
Matches: 41,  Mismatches: 3, Indels: 6
        0.82            0.06        0.12

Matches are distributed among these distances:
  45    5  0.12
  46   11  0.27
  47   17  0.41
  49    8  0.20

ACGTcount: A:0.58, C:0.08, G:0.10, T:0.25


Consensus pattern (44 bp):   
AAAAATTTTTTTTTTAAAAAAAAAACGCAAAAGAAAAAGAGAAA
Done.