Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023726.1 Corchorus olitorius cultivar O-4 contig23759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3585
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38


Found at i:812 original size:45 final size:45

Alignment explanation


    Indices: 748--863  Score: 205
    Period size: 45  Copynumber: 2.6  Consensus size: 45

        738 AGCAACAATT

                        *                                
        748 AATATTAGGTTTCTTTTGATGAATTACCTAGAGATGGAGGAGTAG
          1 AATATTAGGTTTATTTTGATGAATTACCTAGAGATGGAGGAGTAG

                    *                                   *
        793 AATATTAGTTTTATTTTGATGAATTACCTAGAGATGGAGGAGTAT
          1 AATATTAGGTTTATTTTGATGAATTACCTAGAGATGGAGGAGTAG

                                      
        838 AATATTAGGTTTATTTTGATGAATTA
          1 AATATTAGGTTTATTTTGATGAATTA

        864 TGATCGAGCT


Statistics
Matches: 67,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  45   67  1.00

ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41


Consensus pattern (45 bp):   
AATATTAGGTTTATTTTGATGAATTACCTAGAGATGGAGGAGTAG
Done.