Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023743.1 Corchorus olitorius cultivar O-4 contig23776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40269

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7573--7608
10
3.6
10
84
0
54
50
8
2
38
1.47
8877--8983
50
2.1
50
94
0
187
50
18
19
11
1.77
9208--9457
33
7.6
33
70
11
120
29
19
2
49
1.60
9321--9374
17
3.2
17
77
15
67
18
20
0
61
1.35
10746--10787
19
2.2
20
91
4
68
30
19
0
50
1.48
10751--10836
24
3.8
22
71
18
52
25
18
1
54
1.51
10837--10985
33
4.8
31
70
17
114
30
18
2
48
1.61
10815--10982
90
1.9
91
93
1
293
29
17
2
50
1.59
11659--11700
19
2.3
19
91
4
68
61
16
7
14
1.53
11659--11737
34
2.3
35
80
10
92
58
17
10
13
1.63
15052--15076
12
2.1
12
100
0
50
52
16
0
32
1.44
15207--15255
14
3.6
14
69
20
50
38
18
8
34
1.80
15210--15260
26
2.0
26
92
0
84
39
15
11
33
1.84
19849--19895
3
15.7
3
100
0
94
31
0
0
68
0.90
22805--22840
18
2.0
18
100
0
72
11
16
22
50
1.77
35913--35992
38
2.1
38
86
4
108
42
16
10
31
1.81
35938--35992
17
2.8
21
71
21
64
45
14
10
29
1.79
39328--39394
35
1.9
35
84
0
89
25
0
32
41
1.56

Tables:   1

The End!