Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023744.1 Corchorus olitorius cultivar O-4 contig23777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14727

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2683--2970
35
8.5
33
71
20
175
28
19
2
50
1.60
2873--2962
34
2.8
31
80
9
108
32
18
0
48
1.49
2955--2993
9
4.3
9
80
0
51
17
15
0
66
1.25
3005--3229
21
10.8
22
72
16
185
20
20
4
53
1.63
3099--3214
7
16.3
7
70
16
60
18
21
3
56
1.57
3098--3193
29
3.4
28
75
16
108
19
20
3
56
1.56
3097--3210
57
2.0
57
89
1
174
20
21
4
54
1.61
3097--3237
57
2.4
57
84
2
156
20
19
4
54
1.62
3178--3345
37
4.4
37
78
13
171
20
19
7
53
1.68
3096--3347
80
3.2
80
88
3
332
20
19
6
53
1.66
3131--3374
80
3.1
80
89
2
332
19
20
7
53
1.68
3644--3685
20
2.1
20
100
0
84
19
42
23
14
1.87
6715--6762
22
2.1
23
92
3
80
47
14
20
16
1.82
7276--7595
61
5.2
61
86
4
405
24
23
15
37
1.92
7461--7570
35
3.4
35
71
21
130
24
22
16
36
1.94
8676--8732
1
57.0
1
78
0
60
0
0
10
89
0.49
8676--8730
6
9.7
6
92
7
89
0
0
10
89
0.50
8783--8842
21
2.9
20
76
16
52
26
15
8
50
1.72
10383--10432
14
3.8
13
80
14
59
34
16
6
44
1.72
10383--10432
26
1.9
25
84
15
66
34
16
6
44
1.72
13209--13301
35
2.6
37
78
11
113
25
18
5
50
1.68
13229--13523
35
8.6
34
71
17
182
28
20
1
49
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13421--13510
34
2.8
31
80
9
108
32
18
0
48
1.49
13503--13541
9
4.3
9
81
12
53
15
17
0
66
1.25
13525--13567
22
2.0
22
85
0
59
25
27
2
44
1.66
13553--13634
21
3.9
21
75
19
64
24
15
7
52
1.68

Tables:   1

The End!