genome.fa.s23747.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023747.1 Corchorus olitorius cultivar O-4 contig23780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107474

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2982--3089	32	3.4	31	66	20	78	37	12	15	35	1.85
10606--10633	13	2.2	13	100	0	56	0	7	0	92	0.37
21773--21812	21	1.9	21	90	10	64	22	20	17	40	1.92
26036--26214	81	2.2	81	83	3	216	51	16	13	18	1.76
29664--29736	26	2.7	27	80	4	85	43	26	13	16	1.85
34998--35074	33	2.3	33	82	4	93	31	9	14	45	1.76
35112--35260	54	2.7	54	84	2	190	32	21	18	28	1.96
35223--35295	33	2.2	33	82	0	92	34	21	17	26	1.96
35178--35348	86	2.0	87	84	3	229	32	21	17	28	1.96
35264--36106	54	15.7	54	86	2	1119	33	20	17	28	1.95
36107--36478	37	10.1	37	78	4	347	44	15	17	23	1.86
36107--36473	111	3.3	111	83	3	409	44	15	16	23	1.86
37444--37503	6	10.0	6	73	12	52	0	16	6	76	0.99
37441--37503	11	5.4	11	74	12	54	0	17	6	76	0.99
37450--37533	30	2.8	30	77	13	75	0	22	4	72	1.03
38143--38207	14	4.8	13	75	9	67	33	12	10	43	1.77
38143--38207	28	2.4	28	82	7	80	33	12	10	43	1.77
39425--39469	22	2.0	23	86	4	65	31	0	15	53	1.43
39632--39669	19	2.0	19	85	10	51	39	5	10	44	1.61
43785--43851	26	2.5	26	76	11	64	23	16	22	37	1.94
46371--46400	14	2.1	15	93	6	53	50	0	50	0	1.00
46369--46402	17	1.9	18	88	5	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49522--49546	2	12.5	2	100	0	50	52	0	0	48	1.00
52380--52456	30	2.5	30	87	6	102	27	10	25	36	1.89
55319--55388	22	3.0	23	77	10	70	28	15	18	37	1.92
58128--58162	13	2.6	13	90	4	52	51	0	0	48	1.00
58993--59078	25	3.4	25	100	0	172	34	0	0	65	0.93
58997--59083	14	6.6	15	72	26	81	34	0	0	65	0.93
59012--59086	12	6.1	12	71	27	59	33	0	0	66	0.92
59986--60083	31	3.2	31	83	8	103	33	12	11	42	1.78
60010--60083	31	2.4	31	86	8	114	35	13	9	41	1.77
63186--63210	13	1.9	13	100	0	50	44	0	0	56	0.99
70359--70464	54	1.9	55	94	1	187	38	7	32	21	1.82
79998--80061	28	2.2	30	80	8	78	20	29	14	35	1.92
88367--88426	31	1.9	31	100	0	120	35	20	20	25	1.96
88398--88472	39	1.9	39	94	0	132	33	18	21	26	1.96
88778--88834	29	2.0	29	86	6	80	19	21	8	50	1.74
89813--89880	31	2.2	31	86	0	91	26	23	14	35	1.94
89497--90083	293	2.0	293	94	0	1030	31	18	15	34	1.92
90313--90433	22	5.7	20	76	9	91	40	14	8	36	1.77
90309--90454	43	3.4	41	79	11	127	38	14	8	38	1.77
90386--90456	21	3.3	21	77	13	65	38	15	7	39	1.75
90404--90496	22	4.3	21	73	13	64	29	16	8	46	1.76
91791--92004	107	2.0	106	98	0	410	50	15	8	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92201--92232	15	2.1	15	100	0	64	40	31	0	28	1.57
93227--93322	26	3.7	26	85	2	147	19	15	21	42	1.88
93221--93350	53	2.5	53	96	0	233	20	16	23	40	1.91
93225--93350	26	4.7	27	79	7	141	19	15	23	41	1.89
96154--96241	43	2.0	43	100	0	176	26	13	13	46	1.80
103934--104033	51	1.9	52	86	6	141	38	27	4	31	1.75
106311--106367	22	2.8	20	83	5	69	19	14	33	33	1.91

Tables:   1

The End!