Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023749.1 Corchorus olitorius cultivar O-4 contig23782, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63999

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6082--6219
69
2.0
69
95
0
249
28
6
37
27
1.82
12841--12897
27
2.1
27
100
0
114
24
26
10
38
1.88
13751--13787
19
1.9
19
94
0
65
35
13
35
16
1.88
16075--16124
24
2.1
24
88
0
73
28
14
32
26
1.94
18935--18972
19
2.0
19
94
0
67
18
15
26
39
1.91
20949--21006
19
2.9
20
80
14
75
53
0
1
44
1.10
20950--21018
14
4.6
16
79
17
67
52
0
2
44
1.16
20950--21020
26
2.8
25
78
16
74
52
0
2
45
1.15
24057--24094
12
3.2
12
88
3
60
73
0
26
0
0.83
24378--24427
21
2.3
21
79
3
55
30
26
8
36
1.85
25504--25535
11
2.8
12
81
18
50
78
0
21
0
0.76
25513--25541
14
2.0
15
93
6
51
75
0
24
0
0.80
25479--25537
27
2.2
26
81
6
64
77
1
20
0
0.85
25578--25627
19
2.7
18
78
6
55
72
2
22
4
1.12
28309--28626
158
2.0
159
92
0
530
35
9
15
39
1.79
35391--35434
3
14.3
3
80
4
52
40
0
2
56
1.11
44035--44059
13
1.9
13
100
0
50
16
4
24
56
1.57
56183--56267
42
2.0
42
90
4
136
41
16
4
37
1.69
56492--56540
23
2.1
23
88
0
71
30
36
22
10
1.87
58321--58375
17
3.2
16
80
10
56
38
16
21
23
1.93
60536--60686
32
4.7
32
95
0
257
26
17
26
29
1.98
60512--60686
64
2.7
64
89
1
215
27
16
25
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62213--62247
17
2.1
17
88
0
52
51
20
8
20
1.73
63061--63247
27
6.9
27
92
0
320
19
19
42
18
1.89

Tables:   1

The End!