Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002375.1 Corchorus olitorius cultivar O-4 contig02375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3504
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:246 original size:132 final size:132

Alignment explanation


    Indices: 17--255  Score: 460
    Period size: 132  Copynumber: 1.8  Consensus size: 132

          7 TGTTTATCTT

                                                              *              
         17 TATCTTATCTTGTACTTAGATGTAGCTTAACCCTTTTCTGATCTTGTAAAGTCAAACCTTGTACC
          1 TATCTTATCTTGTACTTAGATGTAGCTTAACCCTTTTCTGATCTTGTAAACTCAAACCTTGTACC

                                                                             
         82 GATCCTAACCTATACTTTGTACCTATATATTCATATCAGAATACAATGAAAAGATCTTTTTTATA
         66 GATCCTAACCTATACTTTGTACCTATATATTCATATCAGAATACAATGAAAAGATCTTTTTTATA

              
        147 TC
        131 TC

                                           *                                 
        149 TATCTTATCTTGTACTTAGATGTAGCTTAACTCTTTTCTGATCTTGTAAACTCAAACCTTGTACC
          1 TATCTTATCTTGTACTTAGATGTAGCTTAACCCTTTTCTGATCTTGTAAACTCAAACCTTGTACC

                                                      
        214 GATCCTAACCTATACTTTGTACCTATATATTCATATCAGAAT
         66 GATCCTAACCTATACTTTGTACCTATATATTCATATCAGAAT

        256 GAAACTAGAT


Statistics
Matches: 105,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 132  105  1.00

ACGTcount: A:0.29, C:0.21, G:0.10, T:0.41


Consensus pattern (132 bp):   
TATCTTATCTTGTACTTAGATGTAGCTTAACCCTTTTCTGATCTTGTAAACTCAAACCTTGTACC
GATCCTAACCTATACTTTGTACCTATATATTCATATCAGAATACAATGAAAAGATCTTTTTTATA
TC
Done.