Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023751.1 Corchorus olitorius cultivar O-4 contig23784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57174

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1631--1665
16
2.2
16
100
0
70
11
25
17
45
1.81
2703--2792
5
19.0
5
69
21
52
44
2
0
53
1.13
2703--2779
11
6.9
11
70
21
54
44
1
0
54
1.08
2747--2825
22
3.7
21
74
19
65
48
5
0
46
1.24
3831--3957
64
2.0
64
98
0
245
29
14
21
35
1.92
8316--9297
218
4.5
218
88
1
1360
35
20
8
36
1.83
9909--9947
16
2.5
16
83
4
53
74
0
10
15
1.07
15044--15083
19
2.1
19
85
0
53
70
10
7
12
1.35
18917--19423
258
2.0
256
96
0
924
24
25
10
39
1.88
22156--22207
19
2.8
18
77
8
59
46
0
3
50
1.20
22163--22205
22
1.9
22
85
4
59
44
0
2
53
1.13
23570--23675
51
2.1
50
81
11
119
20
20
13
45
1.84
27431--27475
20
2.2
20
88
4
63
46
11
11
31
1.74
30384--30425
15
2.7
15
92
3
66
64
14
9
11
1.50
31187--31212
11
2.4
11
100
0
52
69
7
15
7
1.35
32513--32562
21
2.4
21
86
0
64
18
48
24
10
1.78
33161--33193
16
2.1
16
100
0
66
39
18
6
36
1.75
35074--35099
11
2.4
11
100
0
52
7
15
7
69
1.35
48246--48278
5
6.6
5
92
0
57
0
39
0
60
0.97
48507--48532
13
2.0
13
100
0
52
15
0
30
53
1.42
50073--50122
18
3.1
18
70
24
56
40
30
4
26
1.74
50243--50348
51
2.1
50
79
11
110
20
23
13
42
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55055--55091
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!