Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023759.1 Corchorus olitorius cultivar O-4 contig23792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53787
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:9814 original size:2 final size:2
Alignment explanation
Indices: 9809--9842 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9799 ATAAGCGACC
9809 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9843 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12441 original size:21 final size:21
Alignment explanation
Indices: 12411--12452 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
12401 AGTCCGAAAA
*
12411 TTTGATATAAAATTTGGTTTT
1 TTTGACATAAAATTTGGTTTT
12432 TTTGACATAAAATTTGGTTTT
1 TTTGACATAAAATTTGGTTTT
12453 CATGACGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.55
Consensus pattern (21 bp):
TTTGACATAAAATTTGGTTTT
Found at i:12458 original size:21 final size:21
Alignment explanation
Indices: 12417--12458 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
12407 AAAATTTGAT
**
12417 ATAAAATTTGGTTTTTTTGAC
1 ATAAAATTTGGTTTTCATGAC
12438 ATAAAATTTGGTTTTCATGAC
1 ATAAAATTTGGTTTTCATGAC
12459 GTATTCTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (21 bp):
ATAAAATTTGGTTTTCATGAC
Found at i:15539 original size:78 final size:78
Alignment explanation
Indices: 15410--15565 Score: 312
Period size: 78 Copynumber: 2.0 Consensus size: 78
15400 TGTTGGGCAC
15410 TTGAAACTTGAGGGCATGCATGGGATATATACTTCCATTAATCATGCATTTTGGTTATAAACTTT
1 TTGAAACTTGAGGGCATGCATGGGATATATACTTCCATTAATCATGCATTTTGGTTATAAACTTT
15475 GTTTAAATTACAA
66 GTTTAAATTACAA
15488 TTGAAACTTGAGGGCATGCATGGGATATATACTTCCATTAATCATGCATTTTGGTTATAAACTTT
1 TTGAAACTTGAGGGCATGCATGGGATATATACTTCCATTAATCATGCATTTTGGTTATAAACTTT
15553 GTTTAAATTACAA
66 GTTTAAATTACAA
15566 ATTGTTGAAT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (78 bp):
TTGAAACTTGAGGGCATGCATGGGATATATACTTCCATTAATCATGCATTTTGGTTATAAACTTT
GTTTAAATTACAA
Found at i:19598 original size:40 final size:40
Alignment explanation
Indices: 19554--19634 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
19544 TTGTTTTTAT
19554 TTTCTAAGGTGATGTTACTGATGTATCTTTAATATATAAA
1 TTTCTAAGGTGATGTTACTGATGTATCTTTAATATATAAA
19594 TTTCTAAGGTGATGTTACTGATGTATCTTTAATATATAAA
1 TTTCTAAGGTGATGTTACTGATGTATCTTTAATATATAAA
19634 T
1 T
19635 AAATAAATTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (40 bp):
TTTCTAAGGTGATGTTACTGATGTATCTTTAATATATAAA
Found at i:21764 original size:85 final size:85
Alignment explanation
Indices: 21666--21844 Score: 295
Period size: 85 Copynumber: 2.1 Consensus size: 85
21656 TAATTAAATT
* *
21666 AGTAATATAGTAAAAATAAAATAGTTATAAGGATATTAGTTTTAATTAAATAAAAATAGAGTTTT
1 AGTAAAATAGTAAAAATAAAATAGTTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTT
*
21731 TAGTTGAGTAAAACTATAAA
66 TAGTTGACTAAAACTATAAA
* *
21751 AGTAAAATGGTAAAAATAAAATAGTTATAAGGATATTAGATTTAATTAATTAAAAATAGAGTTTT
1 AGTAAAATAGTAAAAATAAAATAGTTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTT
*
21816 TAGTTGACTAAAATTATAAA
66 TAGTTGACTAAAACTATAAA
*
21836 AGTTAAATA
1 AGTAAAATA
21845 ATGACATTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (85 bp):
AGTAAAATAGTAAAAATAAAATAGTTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTT
TAGTTGACTAAAACTATAAA
Found at i:22221 original size:13 final size:13
Alignment explanation
Indices: 22195--22230 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
22185 AAAAGTTTGG
22195 TTTTGAAGAAGTGC
1 TTTTGAA-AAGTGC
22209 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
22222 TTTTTAAAA
1 TTTTGAAAA
22231 TTGGGGTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:25634 original size:22 final size:22
Alignment explanation
Indices: 25600--25725 Score: 96
Period size: 22 Copynumber: 5.7 Consensus size: 22
25590 ATAGGAAGGT
*
25600 TTATTAAAATTTCATAGTTAAA
1 TTATCAAAATTTCATAGTTAAA
* * *
25622 TTATCAAAGTTTCATA-TGAAGT
1 TTATCAAAATTTCATAGTTAA-A
* *
25644 TTATCATAATTTCATAGGTAAA
1 TTATCAAAATTTCATAGTTAAA
* **
25666 TTATCAAAATTTCATAGCGT-GG
1 TTATCAAAATTTCATAG-TTAAA
* * *
25688 TTATCAAAATTTAATAG-GATAG
1 TTATCAAAATTTCATAGTTA-AA
25710 TTATCAAAATTTCATA
1 TTATCAAAATTTCATA
25726 AAAATATTCA
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.04
22 76 0.92
23 4 0.05
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.40
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTTAAA
Found at i:25646 original size:44 final size:45
Alignment explanation
Indices: 25581--25725 Score: 172
Period size: 44 Copynumber: 3.3 Consensus size: 45
25571 AGGAAGCTTA
* *
25581 CAAAATTTCATAGGAAGGTTTATTAAAATTTCATAGTTAAATTAT
1 CAAAATTTCATAGGAAGGTTTATCAAAATTTCATAGGTAAATTAT
* * *
25626 CAAAGTTTCATATGAA-GTTTATCATAATTTCATAGGTAAATTAT
1 CAAAATTTCATAGGAAGGTTTATCAAAATTTCATAGGTAAATTAT
* * *
25670 CAAAATTTCATAGCG-TGG-TTATCAAAATTTAATAGG-ATAGTTAT
1 CAAAATTTCATAG-GAAGGTTTATCAAAATTTCATAGGTA-AATTAT
25714 CAAAATTTCATA
1 CAAAATTTCATA
25726 AAAATATTCA
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 69 0.80
45 16 0.19
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.39
Consensus pattern (45 bp):
CAAAATTTCATAGGAAGGTTTATCAAAATTTCATAGGTAAATTAT
Found at i:27168 original size:29 final size:30
Alignment explanation
Indices: 27114--27170 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
27104 GACTAAAACG
27114 TCCAAAATTGAGAGTTTAGGAGGCAAAATA
1 TCCAAAATTGAGAGTTTAGGAGGCAAAATA
* *
27144 TCCAAAATTGA-AGTTTATGTGGCAAAA
1 TCCAAAATTGAGAGTTTAGGAGGCAAAA
27171 CGTCGAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (30 bp):
TCCAAAATTGAGAGTTTAGGAGGCAAAATA
Found at i:28814 original size:23 final size:23
Alignment explanation
Indices: 28788--28831 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
28778 TTTCTGGGTT
*
28788 TTTTTTTTTAAAATCTTTTTAGA
1 TTTTCTTTTAAAATCTTTTTAGA
**
28811 TTTTCTTTTAATTTCTTTTTA
1 TTTTCTTTTAAAATCTTTTTA
28832 TCTTTTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTCTTTTAAAATCTTTTTAGA
Found at i:32426 original size:2 final size:2
Alignment explanation
Indices: 32419--32452 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
32409 TTAACGTACT
32419 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32453 AAATGATCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:35195 original size:68 final size:68
Alignment explanation
Indices: 35052--35221 Score: 333
Period size: 68 Copynumber: 2.5 Consensus size: 68
35042 TTACAACATT
35052 AAATTGATCCATTACTCTTAATTTGTGTTATTGA-TTTTTTTTTTGCTACATAACAACCATAAAA
1 AAATTGATCCATTACTCTTAATTTGTGTTATTGATTTTTTTTTTTGCTACATAACAACCATAAAA
35116 ACA
66 ACA
35119 AAATTGATCCATTACTCTTAATTTGTGTTATTGATTTTTTTTTTTGCTACATAACAACCATAAAA
1 AAATTGATCCATTACTCTTAATTTGTGTTATTGATTTTTTTTTTTGCTACATAACAACCATAAAA
35184 ACA
66 ACA
35187 AAATTGATCCATTACTCTTAATTTGTGTTATTGAT
1 AAATTGATCCATTACTCTTAATTTGTGTTATTGAT
35222 AACTATAGTT
Statistics
Matches: 102, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 34 0.33
68 68 0.67
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (68 bp):
AAATTGATCCATTACTCTTAATTTGTGTTATTGATTTTTTTTTTTGCTACATAACAACCATAAAA
ACA
Found at i:35419 original size:29 final size:29
Alignment explanation
Indices: 35386--35441 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
35376 TTAAGTTAGT
* *
35386 CTCAAAGAAACTCCAGGTTATGTGAGAGG
1 CTCAAAGAAACTCCAGATTAGGTGAGAGG
*
35415 CTCAAAGAAGCTCCAGATTAGGTGAGA
1 CTCAAAGAAACTCCAGATTAGGTGAGA
35442 CTTGGGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.20
Consensus pattern (29 bp):
CTCAAAGAAACTCCAGATTAGGTGAGAGG
Found at i:35750 original size:29 final size:28
Alignment explanation
Indices: 35683--35759 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 28
35673 AAACTTACAC
* *
35683 AAAACGGCCAAATAAGCCCCTGAATTCT
1 AAAAAGGCCAAATAAGCCCCTGAACTCT
*
35711 AATTATA-GCCAAATAAGCCCCTGAACTCTT
1 AA--AAAGGCCAAATAAGCCCCTGAACTC-T
35741 AAAAAGGCCAAATAAGCCC
1 AAAAAGGCCAAATAAGCCC
35760 TTTTCGGACG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 4 0.10
29 33 0.80
30 4 0.10
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (28 bp):
AAAAAGGCCAAATAAGCCCCTGAACTCT
Found at i:37171 original size:31 final size:31
Alignment explanation
Indices: 37135--37230 Score: 104
Period size: 31 Copynumber: 3.0 Consensus size: 31
37125 AATTTTCGAA
*
37135 TAGCGGCGTTTCGTACAAAAACGCCACTATT
1 TAGCGGCGTTTCGTACAAAAACGCCGCTATT
* **
37166 TAGCGGCGTTTTTCATACTGAAACGCCGCTATT
1 TAGCGGCG--TTTCGTACAAAAACGCCGCTATT
* *
37199 TAGTGGCATTTCCGTA-AAAAACGCCGCTATT
1 TAGCGGCGTTT-CGTACAAAAACGCCGCTATT
37230 T
1 T
37231 TGGCTTTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
31 25 0.47
32 3 0.06
33 25 0.47
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (31 bp):
TAGCGGCGTTTCGTACAAAAACGCCGCTATT
Found at i:37246 original size:29 final size:30
Alignment explanation
Indices: 37186--37248 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
37176 TTTCATACTG
*
37186 AAACGCCGCTATTTAGTGGCATTTCCGTAAA
1 AAACGCCGCTATTTA-TGGCATTTCCATAAA
* **
37217 AAACGCCGCTATTT-TGGCTTTTTTATAAA
1 AAACGCCGCTATTTATGGCATTTCCATAAA
37246 AAA
1 AAA
37249 TATATCGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 14 0.50
31 14 0.50
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (30 bp):
AAACGCCGCTATTTATGGCATTTCCATAAA
Found at i:40181 original size:11 final size:12
Alignment explanation
Indices: 40165--40235 Score: 56
Period size: 12 Copynumber: 6.0 Consensus size: 12
40155 TTGGGCCTGG
40165 GGCCCAAGC-CT
1 GGCCCAAGCGCT
*
40176 GGCCCAGGCGCT
1 GGCCCAAGCGCT
*
40188 GGGCCAAGCGCT
1 GGCCCAAGCGCT
**
40200 GGCCCGTGCGCCT
1 GGCCCAAGCG-CT
**
40213 GG-CCTGGCGCT
1 GGCCCAAGCGCT
*
40224 GGGCCAAGCGCT
1 GGCCCAAGCGCT
40236 TGGGTCGCGC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
11 12 0.26
12 31 0.66
13 4 0.09
ACGTcount: A:0.10, C:0.39, G:0.39, T:0.11
Consensus pattern (12 bp):
GGCCCAAGCGCT
Found at i:40454 original size:3 final size:3
Alignment explanation
Indices: 40446--40516 Score: 133
Period size: 3 Copynumber: 23.7 Consensus size: 3
40436 ACTCCCAAAT
*
40446 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
40494 TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
40517 TCACTTCAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:44864 original size:27 final size:27
Alignment explanation
Indices: 44828--44901 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
44818 TCCGGCATTT
*
44828 AAGGGCAAAACTGTAATTTAGTTAACC
1 AAGGGCAAAACTGTAATTTAGCTAACC
* * *
44855 AGGGGTAAAA-TGGTAATTTTAGCTGACC
1 AAGGGCAAAACT-GTAA-TTTAGCTAACC
*
44883 AAGGGCAAAACAGTAATTT
1 AAGGGCAAAACTGTAATTT
44902 TGACATCTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.03
27 15 0.41
28 21 0.57
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAACTGTAATTTAGCTAACC
Found at i:45877 original size:3 final size:3
Alignment explanation
Indices: 45871--45906 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
45861 GCCCTTTTTT
* *
45871 TTC TTC TTC TTC TTC TTC TTC TTC TCC CTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
45907 CGGCAACCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TTC
Found at i:46607 original size:3 final size:3
Alignment explanation
Indices: 46599--46666 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
46589 ACTCCCAAAT
*
46599 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
46647 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
46667 TCACTTCAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:52253 original size:21 final size:21
Alignment explanation
Indices: 52229--52268 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
52219 AGTTTAAAGT
52229 ATTTGAATTATTTTAGTAATA
1 ATTTGAATTATTTTAGTAATA
* * *
52250 ATTTTAGTTATTTTTGTAA
1 ATTTGAATTATTTTAGTAA
52269 AAATGCTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (21 bp):
ATTTGAATTATTTTAGTAATA
Found at i:53472 original size:438 final size:431
Alignment explanation
Indices: 52721--53746 Score: 1177
Period size: 438 Copynumber: 2.3 Consensus size: 431
52711 TTGTATTTTT
* * *
52721 TTCTATTTGTCCGATTAAGGTGATTCCAGTGTCTATTAAAAGGTAATTTGATGATCTGCAATTTT
1 TTCTATTTGTCCGATTAAGGTGATT-CAGTGTCTATTAAAAGGTAATTTCATGATCTACAACTTT
* * * * * *
52786 CATTAAGAACTCAAAAGCCAATTTTAATGTTT-TGATTCTAAAAATTGCTTCCGAAATTTTGTGG
65 CATGAAGGACTCAAAAGCTAA-TTT-ATGTTTCT-ATTCTAAAAAATGCTT-CTAAATTTTGTGA
* * * * * ** * * *
52850 TTTTGATTGCCGGTTAATTTAATATCGTATAATTTTTTATCCACATGTCCGATTGAAGTTATTGA
126 TTTCGATTGCCAGTTAATTTAATACCATATAATGTTCGATCCACATGTCCAATTAAAGTTATTCA
* * ** * **
52915 AGGGTCGGTTAAAAGGTTATTGCATGCTTTACGACTTTCATGAAGGACCCCAAAGCTCAATTTGA
191 AGGGTCGGTTAAAAGGTTACTACATAATCTACGACTTTCATGAAAAACCCCAAAGCTCAATTTGA
*
52980 TCTACGAGTTTCGTGAAGGGTTCAAAAGGGAATTTTTATGTTTCAAGATCTCCATTAACAAACAT
256 TCTACGAGTTTCATGAAGGGTTCAAAAGGGAATTTTTATGTTTCAAGATCTCCATTAACAAACAT
* * * ** *
53045 TTTCTTATTTGGATTATTTATCAAATGACCCTCATGTTTTTCT-CTTTATACTATTTAGTCCTTT
321 TTTCTTATTTGAATTAGTTATCAAATCACCCTCATACTTTTCTACTTTATACTACTTAGTCCTTT
* *
53109 ACAAATTCTATCTTAATTAATTTAACGTTTAAGCTTTATTTTTTTTATTCTTCG
386 ACAAATTCTATCTTAATCAATTTAAC------GCTTCA-TTTTTTT-TTCTTCG
* *
53163 TTCTATTTGTCCGATTAAGTTGATTCATGTGTCTATTAAAAGGTAATTTCATGAGT-TACAACCT
1 TTCTATTTGTCCGATTAAGGTGATTCA-GTGTCTATTAAAAGGTAATTTCATGA-TCTACAACTT
* * *
53227 TCATGAAGGACTCAAAAG-TAA-TTATGTTTCTATTCAAAAAAATGCTTGCTAAATTTGGTCATT
64 TCATGAAGGACTCAAAAGCTAATTTATGTTTCTATTCTAAAAAATGCTT-CTAAATTTTGTGATT
** *
53290 TCGATTGTTAGTCT-ATTTAATACCATATATAATGTTCGATCTACATGTCCAATTAAAGTTATTC
128 TCGATTGCCAGT-TAATTTAATACC--ATATAATGTTCGATCCACATGTCCAATTAAAGTTATTC
* * * *
53354 AAGTGTCGGTTAAAAGGTTACTATATAATCTACGAC-TTCATGAAAAACCCGAAAG-TTAATTTG
190 AAGGGTCGGTTAAAAGGTTACTACATAATCTACGACTTTCATGAAAAACCCCAAAGCTCAATTTG
* *
53417 ATCTACGAGTTTCATGAAGGGTTCAAAAGTGAATTTTTATGTTTCAAGATCTCCATTAACAAATA
255 ATCTACGAGTTTCATGAAGGGTTCAAAAGGGAATTTTTATGTTTCAAGATCTCCATTAACAAACA
* *
53482 TTTTCTTATTTGAATTAGTTATCAAATCACCCTCATACTTTTCTATTTTATGCTACTTAGTCCTT
320 TTTTCTTATTTGAATTAGTTATCAAATCACCCTCATACTTTTCTACTTTATACTACTTAGTCCTT
* * *
53547 TACAAATTCTATCTTACTCGATTTAACGCTTCATTTTTTTTTCTTTG
385 TACAAATTCTATCTTAATCAATTTAACGCTTCATTTTTTTTTCTTCG
* * * * *
53594 TTCTATTTGTCCAATTAAGGTAATTCAGGTGTCTATTGAAAGGTAATTTTATTATCTACAACTTT
1 TTCTATTTGTCCGATTAAGGTGATTCA-GTGTCTATTAAAAGGTAATTTCATGATCTACAACTTT
* * * * * *
53659 CATGAAAGATTTAAAAGCTAATTTTTATGTTTCAATTCTCAAAAATGCTTTTGAAATTTTGTGAT
65 CATGAAGGACTCAAAAGCTAA--TTTATGTTTCTATTCTAAAAAATGCTTCT-AAATTTTGTGAT
* * *
53724 TTCGATTGACAATTTATTTAATA
127 TTCGATTGCCAGTTAATTTAATA
53747 TATCATATTA
Statistics
Matches: 495, Mismatches: 75, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
430 1 0.00
431 75 0.15
432 10 0.02
433 5 0.01
434 2 0.00
435 51 0.10
438 156 0.32
439 61 0.12
440 59 0.12
441 4 0.01
442 70 0.14
443 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (431 bp):
TTCTATTTGTCCGATTAAGGTGATTCAGTGTCTATTAAAAGGTAATTTCATGATCTACAACTTTC
ATGAAGGACTCAAAAGCTAATTTATGTTTCTATTCTAAAAAATGCTTCTAAATTTTGTGATTTCG
ATTGCCAGTTAATTTAATACCATATAATGTTCGATCCACATGTCCAATTAAAGTTATTCAAGGGT
CGGTTAAAAGGTTACTACATAATCTACGACTTTCATGAAAAACCCCAAAGCTCAATTTGATCTAC
GAGTTTCATGAAGGGTTCAAAAGGGAATTTTTATGTTTCAAGATCTCCATTAACAAACATTTTCT
TATTTGAATTAGTTATCAAATCACCCTCATACTTTTCTACTTTATACTACTTAGTCCTTTACAAA
TTCTATCTTAATCAATTTAACGCTTCATTTTTTTTTCTTCG
Done.