Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023761.1 Corchorus olitorius cultivar O-4 contig23794, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 965

Length: 1609
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35


Found at i:130 original size:15 final size:14

Alignment explanation


    Indices: 97--126  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

         87 ATAATTATTA

                          
         97 TATTTTTACCATTT
          1 TATTTTTACCATTT

                     *    
        111 TATTTTTACTATTT
          1 TATTTTTACCATTT

              
        125 TA
          1 TA

        127 ATTTAAAAGG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67


Consensus pattern (14 bp):   
TATTTTTACCATTT

Found at i:174 original size:15 final size:15

Alignment explanation


    Indices: 154--184  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        144 GATTAACCTG

                           
        154 TTTCTATTTGATAGT
          1 TTTCTATTTGATAGT

                           
        169 TTTCTATTTGATAGT
          1 TTTCTATTTGATAGT

             
        184 T
          1 T

        185 AATGTATTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61


Consensus pattern (15 bp):   
TTTCTATTTGATAGT
Done.