Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023768.1 Corchorus olitorius cultivar O-4 contig23801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93180

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1029--1058
12
2.4
12
94
5
51
6
23
20
50
1.71
20959--21083
60
2.1
60
98
0
241
30
28
20
20
1.98
26192--26225
16
2.1
16
100
0
68
32
11
17
38
1.86
27124--27187
33
1.9
33
87
0
92
45
9
15
29
1.78
33097--33149
23
2.3
25
81
12
60
24
20
5
49
1.71
37210--37648
30
14.7
30
85
4
480
30
17
18
33
1.94
45809--45902
45
2.2
43
88
7
138
37
23
5
34
1.78
46181--46229
25
2.0
25
100
0
98
53
18
8
20
1.70
55801--55844
19
2.2
20
92
8
72
27
20
22
29
1.99
61721--61769
25
2.0
25
87
0
71
51
0
0
48
1.00
61722--61776
25
2.2
26
78
12
62
52
0
0
47
1.00
73927--73969
17
2.5
17
84
3
50
23
0
4
72
1.04
80681--80731
6
8.5
6
100
0
102
50
15
0
33
1.44
80678--80754
18
4.8
15
87
12
77
53
11
0
35
1.38
92050--92086
12
3.2
12
92
7
67
35
16
16
32
1.91
92051--92086
11
3.2
11
96
4
63
33
16
16
33
1.92

Tables:   1

The End!