Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023770.1 Corchorus olitorius cultivar O-4 contig23803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2083
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:1127 original size:13 final size:13

Alignment explanation


    Indices: 1109--1139  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1099 CTTGGCATGA

                         
       1109 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
       1122 GTGATGATTTTTG
          1 GTGATGATTTTTG

            *    
       1135 TTGAT
          1 GTGAT

       1140 ACCTTGATCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55


Consensus pattern (13 bp):   
GTGATGATTTTTG
Done.