Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023771.1 Corchorus olitorius cultivar O-4 contig23804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7414
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31


Found at i:4183 original size:17 final size:17

Alignment explanation


    Indices: 4161--4194  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       4151 TTTGTGGTAT

                             
       4161 TGGTGATGCCACCTCTC
          1 TGGTGATGCCACCTCTC

                             
       4178 TGGTGATGCCACCTCTC
          1 TGGTGATGCCACCTCTC

       4195 GAATCCATAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.12, C:0.35, G:0.24, T:0.29


Consensus pattern (17 bp):   
TGGTGATGCCACCTCTC

Found at i:6410 original size:32 final size:32

Alignment explanation


    Indices: 6368--6436  Score: 79
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       6358 GCAGGCCCAA

                                              
       6368 GCCTGCTGCGCTAGCCCAGCAGG-C-GCTGGCCT
          1 GCCTGCTGCGC-AGCCCAG-AGGCCTGCTGGCCT

                 *       *                * 
       6400 GCCTGGTGCGCAGGCCAGAGGCCTGCTGGCTT
          1 GCCTGCTGCGCAGCCCAGAGGCCTGCTGGCCT

                 
       6432 GCCTG
          1 GCCTG

       6437 ACCGGCCAGG


Statistics
Matches: 32,  Mismatches: 3, Indels: 4
        0.82            0.08        0.10

Matches are distributed among these distances:
  30    3  0.09
  31    7  0.22
  32   22  0.69

ACGTcount: A:0.09, C:0.36, G:0.38, T:0.17


Consensus pattern (32 bp):   
GCCTGCTGCGCAGCCCAGAGGCCTGCTGGCCT
Done.