Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023772.1 Corchorus olitorius cultivar O-4 contig23805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80238

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2134--2292
22
7.2
22
75
8
126
35
10
14
39
1.80
4077--4119
22
2.0
22
81
9
52
37
0
13
48
1.43
4714--4739
2
13.0
2
100
0
52
50
0
0
50
1.00
5909--6449
22
24.8
21
69
13
195
36
9
16
36
1.82
6349--6574
120
1.9
118
81
5
276
35
7
16
40
1.77
7979--8013
18
1.9
18
88
0
52
40
0
2
57
1.14
10208--10244
18
2.1
18
94
0
65
37
0
24
37
1.56
13133--13186
27
2.0
28
92
3
92
16
16
11
55
1.68
17218--17297
35
2.4
35
85
6
103
10
17
0
72
1.11
21504--21548
20
2.2
20
84
4
54
66
8
8
15
1.43
24344--24386
13
3.2
13
86
6
50
65
2
0
32
1.06
24635--24999
185
2.0
186
92
1
608
23
21
15
39
1.91
26451--26546
45
2.2
42
89
7
149
36
3
20
39
1.69
28311--28377
29
2.3
29
100
0
134
47
20
10
20
1.79
36996--37041
23
2.1
21
84
8
56
50
4
15
30
1.63
40045--40083
16
2.5
16
87
4
53
0
23
0
76
0.78
40043--40122
13
6.3
13
80
8
69
2
21
0
76
0.91
40036--40101
24
2.7
23
76
21
62
3
22
0
74
0.96
40054--40122
26
2.6
27
82
8
81
2
21
0
75
0.93
45941--46153
106
2.0
106
90
1
338
39
19
7
33
1.79
47459--47513
26
2.1
26
96
0
101
47
9
3
40
1.53
47459--47523
26
2.5
26
87
5
87
47
7
4
40
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47621--47681
29
2.1
29
100
0
122
34
6
8
50
1.58
49168--49283
22
5.3
22
77
12
114
37
12
9
39
1.76
49168--49349
22
8.6
21
73
13
108
34
14
8
42
1.77
49168--49281
43
2.6
43
83
5
131
38
13
9
38
1.77
49207--49343
21
6.6
21
73
14
97
32
15
8
43
1.77
49310--49369
22
2.8
22
79
2
77
25
16
8
50
1.73
50205--50340
45
3.0
45
95
0
218
34
13
8
42
1.76
58612--58670
30
1.9
31
86
3
84
32
16
5
45
1.70
64127--64591
22
21.1
22
66
15
131
35
11
17
35
1.86
64533--64611
22
3.6
21
83
11
88
32
8
17
40
1.81
66360--66887
22
23.6
22
66
12
128
35
11
16
36
1.84
66341--66508
44
3.8
43
80
1
147
41
11
12
34
1.80
66360--66517
66
2.4
64
82
6
172
39
11
13
35
1.81
74598--74679
24
3.8
24
69
24
90
47
20
8
23
1.77
79899--79954
27
2.1
27
100
0
112
35
3
21
39
1.71

Tables:   1

The End!