genome.fa.s23774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023774.1 Corchorus olitorius cultivar O-4 contig23807, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87980

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539--1568	13	2.4	12	94	5	51	23	0	6	70	1.11
2706--2758	22	2.4	22	72	12	54	35	16	5	41	1.73
2788--2993	22	9.5	21	68	15	80	37	18	8	34	1.82
4306--4349	22	2.0	22	100	0	88	40	18	18	22	1.91
4912--5034	44	2.8	44	83	2	131	34	13	12	39	1.82
4909--5034	22	5.7	22	76	2	101	33	15	11	39	1.83
5094--5137	22	2.0	22	86	0	61	43	13	9	34	1.76
6125--6324	96	2.1	96	83	1	249	35	13	26	25	1.92
6411--6559	76	2.0	76	83	10	189	38	10	24	26	1.88
6693--6750	19	2.9	20	77	12	57	31	18	13	36	1.90
13034--13340	41	7.5	41	90	2	422	46	15	15	21	1.83
13151--13218	20	3.2	23	66	20	65	45	22	16	16	1.85
15920--15949	15	2.0	15	93	0	51	63	0	16	20	1.31
18823--18857	17	2.1	17	88	0	52	42	5	11	40	1.65
19703--19738	19	1.9	18	88	5	54	41	8	22	27	1.82
21820--21847	14	2.0	14	100	0	56	7	21	21	50	1.72
26163--26219	21	2.8	21	86	7	73	12	21	50	15	1.76
31294--31461	29	5.8	29	83	4	205	42	25	15	16	1.87
31294--31461	59	2.9	58	81	3	205	42	25	15	16	1.87
31303--31475	56	3.0	56	78	5	177	41	24	17	17	1.90
31709--32108	59	6.6	60	85	6	522	43	16	13	27	1.85
32952--33111	41	4.3	35	85	12	178	10	20	10	58	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32952--33110	38	4.1	38	88	9	218	10	20	10	58	1.60
32952--33111	79	2.1	75	85	12	218	10	20	10	58	1.60
45036--45342	41	7.5	41	89	2	413	47	16	14	21	1.83
46377--46410	17	2.0	17	100	0	68	17	17	5	58	1.57
46740--46767	14	2.0	14	100	0	56	7	21	21	50	1.72
47465--47500	18	1.9	19	88	5	56	44	8	22	25	1.80
48798--48867	35	1.9	36	83	11	90	17	12	7	62	1.51
49933--50096	59	2.9	55	75	13	152	40	23	17	18	1.91
49931--50095	29	5.7	29	81	7	176	41	23	16	18	1.89
49933--50097	56	2.9	56	79	5	188	40	23	17	18	1.91
54731--54929	96	2.1	96	83	1	247	34	14	25	25	1.94
57788--57819	2	16.0	2	100	0	64	50	0	0	50	1.00
63729--63775	22	2.1	23	80	7	62	29	8	21	40	1.83
68639--68856	22	9.8	21	71	15	79	36	9	16	38	1.81
68705--68834	44	2.9	44	78	8	140	36	10	16	36	1.83
68866--68970	43	2.4	43	80	13	117	44	8	12	34	1.73
68866--68969	22	4.8	22	75	17	92	45	7	12	34	1.71
71420--71664	131	1.9	127	91	6	408	38	10	1	49	1.46
71650--71688	14	2.9	13	80	3	51	41	2	2	53	1.28
74172--74216	21	2.1	21	83	0	54	33	0	11	55	1.35
80709--80830	49	2.5	48	83	6	131	50	4	18	26	1.67
84447--84471	11	2.3	11	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84745--84783	19	2.1	19	85	0	51	56	2	10	30	1.46
86033--86101	35	1.9	36	91	5	113	27	31	13	27	1.93

Tables:   1

The End!