Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023776.1 Corchorus olitorius cultivar O-4 contig23809, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4798
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30


Found at i:3499 original size:45 final size:45

Alignment explanation


    Indices: 3450--3580  Score: 210
    Period size: 45  Copynumber: 2.9  Consensus size: 45

       3440 CTAAATTCTA

                                                         
       3450 CTCCATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTC
          1 CTCCATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTC

                                      *           * *     
       3495 CTCCATCTCTAGGTAATTCAT-AAAAAAAACGCTAATAATCTACTC
          1 CTCCATCTCTAGGTAATTCATCAAAATAAA-GCTAATATTATACTC

                                                     
       3540 CTCCATCTCTAAGGTAATTCATCAAAATAAAGCTAATATTA
          1 CTCCATCTCT-AGGTAATTCATCAAAATAAAGCTAATATTA

       3581 ATTGTTGCTT


Statistics
Matches: 77,  Mismatches: 6, Indels: 5
        0.88            0.07        0.06

Matches are distributed among these distances:
  44    7  0.09
  45   44  0.57
  46   19  0.25
  47    7  0.09

ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31


Consensus pattern (45 bp):   
CTCCATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTC

Done.