Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023777.1 Corchorus olitorius cultivar O-4 contig23810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33736

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--197
45
2.9
45
97
0
251
37
22
6
33
1.81
1295--1330
19
1.9
18
88
5
54
27
22
8
41
1.82
16805--16865
30
2.0
31
87
6
88
42
9
9
37
1.71
19673--19700
6
4.7
6
100
0
56
85
0
14
0
0.59
21243--21278
19
1.9
18
88
5
54
36
22
0
41
1.54
24243--25947
54
32.1
54
80
10
669
25
20
6
47
1.73
24294--24933
47
12.9
47
81
10
609
28
20
5
45
1.74
24889--25076
58
3.4
57
87
5
267
23
21
5
50
1.69
25087--25159
22
3.2
22
79
11
85
15
20
5
58
1.56
25150--25947
166
4.7
166
89
5
1083
24
20
6
48
1.73
25656--25965
60
5.2
60
96
0
570
22
19
6
51
1.69
25969--26035
22
3.1
22
89
2
100
14
26
2
55
1.54
30685--30724
21
1.9
21
94
0
71
27
37
20
15
1.92
30677--30868
71
2.7
72
88
2
271
34
27
20
16
1.94
30757--30798
21
2.0
21
95
0
75
26
38
16
19
1.92
30829--30871
22
2.0
22
90
0
68
23
32
23
20
1.98

Tables:   1

The End!