Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023778.1 Corchorus olitorius cultivar O-4 contig23811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7171
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32


Found at i:6229 original size:21 final size:21

Alignment explanation


    Indices: 6199--6238  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       6189 CTAAAAACAG

                 *               
       6199 GACAAGTCCTGCCCAGGACTT
          1 GACAACTCCTGCCCAGGACTT

                               
       6220 GACAACTCCTGCCCAGGAC
          1 GACAACTCCTGCCCAGGAC

       6239 CTGGTATGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.25, C:0.38, G:0.23, T:0.15


Consensus pattern (21 bp):   
GACAACTCCTGCCCAGGACTT
Done.