Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002378.1 Corchorus olitorius cultivar O-4 contig02378, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3645
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:2726 original size:198 final size:198

Alignment explanation


    Indices: 2388--2783  Score: 792
    Period size: 198  Copynumber: 2.0  Consensus size: 198

       2378 AGAGTTACTG

                                                                             
       2388 CTATTTGACATCTAACACAAACAGAATAATAACTCCCTCAAAAAAAATGTAATATTCAACGCAAA
          1 CTATTTGACATCTAACACAAACAGAATAATAACTCCCTCAAAAAAAATGTAATATTCAACGCAAA

                                                                             
       2453 AGAGCTCAACCAGAATTTTACCCTCAACTATGATGTATTCAACCTCTCTGTAGCATTTTTTTAGA
         66 AGAGCTCAACCAGAATTTTACCCTCAACTATGATGTATTCAACCTCTCTGTAGCATTTTTTTAGA

                                                                             
       2518 TAAAGATTATAAGAAGATAAGGAATCGAGTAGCAATATTTACCTTCAGTACCGCAATTGTCATGT
        131 TAAAGATTATAAGAAGATAAGGAATCGAGTAGCAATATTTACCTTCAGTACCGCAATTGTCATGT

               
       2583 CAT
        196 CAT

                                                                             
       2586 CTATTTGACATCTAACACAAACAGAATAATAACTCCCTCAAAAAAAATGTAATATTCAACGCAAA
          1 CTATTTGACATCTAACACAAACAGAATAATAACTCCCTCAAAAAAAATGTAATATTCAACGCAAA

                                                                             
       2651 AGAGCTCAACCAGAATTTTACCCTCAACTATGATGTATTCAACCTCTCTGTAGCATTTTTTTAGA
         66 AGAGCTCAACCAGAATTTTACCCTCAACTATGATGTATTCAACCTCTCTGTAGCATTTTTTTAGA

                                                                             
       2716 TAAAGATTATAAGAAGATAAGGAATCGAGTAGCAATATTTACCTTCAGTACCGCAATTGTCATGT
        131 TAAAGATTATAAGAAGATAAGGAATCGAGTAGCAATATTTACCTTCAGTACCGCAATTGTCATGT

               
       2781 CAT
        196 CAT

       2784 AGTTGTTTAT


Statistics
Matches: 198,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 198  198  1.00

ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29


Consensus pattern (198 bp):   
CTATTTGACATCTAACACAAACAGAATAATAACTCCCTCAAAAAAAATGTAATATTCAACGCAAA
AGAGCTCAACCAGAATTTTACCCTCAACTATGATGTATTCAACCTCTCTGTAGCATTTTTTTAGA
TAAAGATTATAAGAAGATAAGGAATCGAGTAGCAATATTTACCTTCAGTACCGCAATTGTCATGT
CAT
Done.