Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023781.1 Corchorus olitorius cultivar O-4 contig23814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28770

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2152--2222
20
3.7
20
81
14
103
0
42
40
16
1.49
2163--2243
38
2.1
40
93
4
139
1
41
40
16
1.56
3969--4125
39
4.1
39
92
1
246
23
17
35
23
1.96
3969--4125
77
2.0
77
90
2
244
23
17
35
23
1.96
5084--5170
40
2.1
41
95
2
158
44
13
14
26
1.83
6813--6915
23
4.5
23
85
6
129
39
4
13
41
1.66
6882--6976
22
4.3
22
76
5
93
34
11
11
42
1.78
6978--7123
22
6.6
22
71
7
98
37
10
13
37
1.80
7981--8038
19
2.9
19
82
5
71
36
10
22
31
1.88
15763--15823
30
2.0
30
90
0
95
26
31
14
27
1.95
20860--21117
107
2.5
105
88
3
360
41
8
8
41
1.65
25628--25842
29
7.4
29
80
2
216
20
18
20
41
1.91
25629--25842
58
3.7
58
79
8
245
19
18
20
41
1.90
25628--25842
87
2.5
87
75
9
247
20
18
20
41
1.91

Tables:   1

The End!