Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023784.1 Corchorus olitorius cultivar O-4 contig23817, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45935

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6993--7069
22
3.6
21
84
5
100
41
10
7
40
1.68
6989--7091
43
2.4
44
83
4
129
40
11
8
38
1.73
7075--7139
22
3.0
22
77
6
69
38
13
7
40
1.74
7142--7194
22
2.5
21
78
6
61
22
15
11
50
1.75
15138--15212
31
2.5
31
88
2
107
34
14
14
36
1.87
15192--15366
85
2.1
85
97
0
332
31
20
24
24
1.98
18844--18884
21
2.0
21
90
9
66
34
9
24
31
1.88
20143--20174
15
2.1
15
100
0
64
25
34
6
34
1.81
22867--22940
33
2.2
33
83
9
89
43
24
6
25
1.79
33087--33116
7
4.3
7
91
0
51
56
13
16
13
1.67
34275--34348
6
12.8
6
85
8
66
6
0
70
22
1.11
34274--34354
9
9.0
9
83
5
76
7
0
70
22
1.12
34274--34348
12
6.5
12
82
11
77
6
0
69
24
1.12
35893--36145
127
2.0
126
98
0
488
24
22
20
32
1.98
41939--42029
31
2.9
31
100
0
182
56
15
8
19
1.65
42541--42570
15
2.0
15
100
0
60
33
13
6
46
1.69

Tables:   1

The End!