Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023785.1 Corchorus olitorius cultivar O-4 contig23818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83484

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3078--3121
8
5.2
8
89
10
70
25
22
0
52
1.48
3078--3121
18
2.6
16
86
13
70
25
22
0
52
1.48
3769--3845
33
2.4
33
89
6
113
22
25
2
49
1.63
3769--3845
32
2.4
32
89
6
111
22
25
2
49
1.63
5319--5397
38
2.1
38
95
4
142
26
12
27
32
1.93
9488--9715
118
1.9
118
95
0
411
34
23
7
34
1.84
10957--11233
22
12.3
22
70
13
138
38
10
17
33
1.85
11128--11178
26
2.0
26
92
0
84
31
9
31
27
1.89
11278--11451
22
8.1
22
74
9
137
32
11
15
40
1.83
11290--11416
66
1.9
65
82
4
157
33
11
14
39
1.83
11831--11975
70
2.1
70
98
0
281
25
6
22
44
1.77
12462--12543
37
2.2
37
91
0
137
29
10
10
48
1.72
12788--12812
13
1.9
13
100
0
50
40
12
8
40
1.72
14560--14585
2
13.0
2
100
0
52
50
0
0
50
1.00
15007--15050
24
1.9
22
81
9
52
34
4
2
59
1.30
18546--18579
15
2.3
15
90
5
52
35
0
0
64
0.94
24545--24588
23
1.9
23
90
0
70
59
0
0
40
0.98
25716--25760
23
1.9
23
90
4
72
44
0
0
55
0.99
33921--33973
26
2.1
26
85
3
72
33
18
7
39
1.79
42241--42339
31
3.3
31
75
5
103
30
22
13
34
1.92
43517--43612
31
3.2
30
77
5
95
37
11
19
31
1.88
45712--45762
25
2.0
25
88
0
75
35
15
9
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48550--48575
13
2.0
13
100
0
52
53
30
0
15
1.42
62246--62282
15
2.3
17
86
9
51
45
0
0
54
1.00
65205--65298
41
2.3
41
98
0
179
23
20
17
39
1.92
66153--66189
12
3.1
12
88
0
56
32
35
0
32
1.58
76502--76529
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!