Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023798.1 Corchorus olitorius cultivar O-4 contig23831, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3118
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:1599 original size:21 final size:21

Alignment explanation


    Indices: 1556--1599  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1546 CCAATTTAGG

                     *     *     
       1556 TTTAGATTTCAATTTCTTGTT
          1 TTTAGATTTAAATTTATTGTT

                                  
       1577 TTTAGATTTAAGATTTATT-TT
          1 TTTAGATTTAA-ATTTATTGTT

              
       1598 TT
          1 TT

       1600 ATGCCTCTTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21   14  0.70
  22    6  0.30

ACGTcount: A:0.23, C:0.05, G:0.09, T:0.64


Consensus pattern (21 bp):   
TTTAGATTTAAATTTATTGTT
Done.