genome.fa.s23800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023800.1 Corchorus olitorius cultivar O-4 contig23833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114589

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5347--5610	131	2.0	131	88	2	397	37	9	2	50	1.48
5601--5636	13	2.7	13	95	4	63	41	5	2	50	1.40
6203--6261	31	1.9	31	82	6	75	11	22	37	28	1.89
8380--8409	15	2.0	15	100	0	60	6	20	13	60	1.55
18334--18591	106	2.5	105	89	4	380	43	8	6	41	1.61
21443--21477	18	1.9	18	94	0	61	20	22	22	34	1.97
22022--22048	8	3.4	8	100	0	54	0	0	11	88	0.50
26357--26407	17	3.1	16	83	8	57	37	21	19	21	1.95
30128--30173	3	15.7	3	90	4	76	65	2	0	32	1.05
36815--37014	102	2.0	98	93	3	337	43	12	3	41	1.58
38096--38129	16	2.1	16	88	0	50	58	5	2	32	1.37
38764--38821	29	2.0	30	86	3	82	12	24	15	48	1.79
43860--43916	27	2.2	26	84	9	71	40	0	3	56	1.17
44157--44397	75	3.3	73	82	11	248	24	23	16	35	1.95
44157--44425	76	3.7	75	83	9	254	23	23	17	35	1.95
44456--44639	94	2.0	94	95	0	332	25	25	22	26	2.00
45040--45146	49	2.2	49	94	0	187	20	8	30	40	1.82
45572--45662	30	3.0	30	86	0	119	24	27	16	31	1.96
45632--45758	48	2.6	47	88	2	173	25	27	15	30	1.96
46179--46342	36	4.6	36	85	3	213	24	25	23	27	2.00
46659--46696	2	19.0	2	100	0	76	50	0	0	50	1.00
46974--47080	45	2.3	47	88	6	157	37	20	23	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50528--50648	27	4.5	27	73	6	93	31	16	26	25	1.96
50627--50719	41	2.3	41	92	0	150	33	10	30	25	1.90
52757--52843	33	2.5	34	94	5	149	50	14	14	19	1.78
52956--53008	18	2.9	18	75	10	54	66	0	3	30	1.10
54857--54914	19	2.9	19	82	5	71	31	20	12	36	1.89
55611--55650	18	2.2	18	86	4	53	45	5	20	30	1.72
58662--58721	30	2.0	30	100	0	120	33	10	16	40	1.82
64199--64246	11	4.7	11	80	12	50	39	10	20	29	1.86
65592--65633	15	2.7	15	92	3	66	14	7	11	66	1.43
68230--68272	22	1.9	23	95	4	79	37	13	23	25	1.92
73895--73977	30	3.0	27	84	10	121	50	3	3	42	1.37
74340--74372	16	2.1	16	100	0	66	33	18	12	36	1.88
77268--77397	65	2.0	65	100	0	260	26	20	23	30	1.98
78974--79068	46	2.1	46	93	0	163	49	20	9	21	1.76
90459--90548	39	2.3	40	86	5	121	23	23	11	42	1.86
92948--93192	129	1.9	129	98	0	472	25	17	26	30	1.97
99153--99259	51	2.1	51	88	10	157	29	6	15	47	1.71
99259--99284	2	13.0	2	100	0	52	50	0	50	0	1.00
105024--105062	15	2.5	16	91	4	62	17	7	10	64	1.48
105349--105400	24	2.2	23	96	0	77	23	48	17	11	1.79
106430--106454	2	12.5	2	100	0	50	48	0	0	52	1.00
107412--107473	32	2.0	31	90	3	97	29	9	19	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108826--108851	8	3.2	8	100	0	52	38	23	0	38	1.55
109701--109737	18	2.1	18	89	0	56	37	10	5	45	1.62
110384--110442	30	2.0	30	90	6	93	61	5	11	22	1.50

Tables:   1

The End!