Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023802.1 Corchorus olitorius cultivar O-4 contig23835, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4713
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:2365 original size:15 final size:15

Alignment explanation


    Indices: 2347--2376  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2337 CTTCTGGCGT

                           
       2347 CTGGATTTCTGCTTC
          1 CTGGATTTCTGCTTC

                      *    
       2362 CTGGATTTCTTCTTC
          1 CTGGATTTCTGCTTC

       2377 ATCTAGGCTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.07, C:0.27, G:0.17, T:0.50


Consensus pattern (15 bp):   
CTGGATTTCTGCTTC
Done.