Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023803.1 Corchorus olitorius cultivar O-4 contig23836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12843
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:10442 original size:29 final size:30

Alignment explanation


    Indices: 10403--10460  Score: 91
    Period size: 30  Copynumber: 2.0  Consensus size: 30

      10393 CTTGATCAAT

                        *                 
      10403 TTTATTAA-TTTCCAAAATCTTCTTTTGGG
          1 TTTATTAATTTTACAAAATCTTCTTTTGGG

                  *                      
      10432 TTTATTTATTTTACAAAATCTTCTTTTGG
          1 TTTATTAATTTTACAAAATCTTCTTTTGG

      10461 AATTGTTTAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  29    7  0.27
  30   19  0.73

ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55


Consensus pattern (30 bp):   
TTTATTAATTTTACAAAATCTTCTTTTGGG
Done.