Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023804.1 Corchorus olitorius cultivar O-4 contig23837, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2260
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28


Found at i:295 original size:30 final size:30

Alignment explanation


    Indices: 259--315  Score: 80
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        249 CGTAGTTTTG

                         *                 
        259 AAAAAAAAATTT-GTTTTGTTTTTGCGTCGA
          1 AAAAAAAAATTTCTTTTTG-TTTTGCGTCGA

                    *                  
        289 AAAAAAAAGTTTCTTTTTGTTTTGCGT
          1 AAAAAAAAATTTCTTTTTGTTTTGCGT

        316 TTTTAATTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  30   19  0.79
  31    5  0.21

ACGTcount: A:0.32, C:0.07, G:0.16, T:0.46


Consensus pattern (30 bp):   
AAAAAAAAATTTCTTTTTGTTTTGCGTCGA

Done.