Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023815.1 Corchorus olitorius cultivar O-4 contig23848, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6437
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31


Found at i:5124 original size:13 final size:13

Alignment explanation


    Indices: 5092--5124  Score: 50
    Period size: 12  Copynumber: 2.5  Consensus size: 13

       5082 TTGCATTAGT

                          
       5092 TTTCACCTAAACAC
          1 TTTC-CCTAAACAC

                         
       5106 -TTCCCTAAACAC
          1 TTTCCCTAAACAC

                   
       5118 TTTCCCT
          1 TTTCCCT

       5125 TAGGATTGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  12    9  0.50
  13    9  0.50

ACGTcount: A:0.27, C:0.39, G:0.00, T:0.33


Consensus pattern (13 bp):   
TTTCCCTAAACAC
Done.