Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023819.1 Corchorus olitorius cultivar O-4 contig23852, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1317
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34


Found at i:807 original size:2 final size:2

Alignment explanation


    Indices: 795--845  Score: 57
    Period size: 2  Copynumber: 25.0  Consensus size: 2

        785 AGTTTAGACT

                               *           *        *        *             
        795 TA TA TA GTA TA TA GA TA TA TA GA TA TA GA TA TA GA TA TA TA TA
          1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                       
        838 TA TA TA TA
          1 TA TA TA TA

        846 CTAGTTAAAG


Statistics
Matches: 40,  Mismatches: 8, Indels: 2
        0.80            0.16        0.04

Matches are distributed among these distances:
   2   38  0.95
   3    2  0.05

ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41


Consensus pattern (2 bp):   
TA

Done.