Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023822.1 Corchorus olitorius cultivar O-4 contig23855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57449

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2242--2457
86
2.5
86
98
0
414
35
14
6
43
1.71
4516--4541
1
26.0
1
100
0
52
100
0
0
0
0.00
4621--4723
51
2.0
50
81
9
120
21
20
13
44
1.85
8219--8307
40
2.2
40
80
4
99
25
22
12
39
1.89
8296--8737
64
6.9
64
87
0
562
26
23
15
34
1.95
11050--11087
9
4.3
9
87
12
53
0
10
0
89
0.49
11050--11075
12
2.2
12
100
0
52
0
7
0
92
0.39
13055--13117
31
2.0
31
84
6
83
52
23
7
15
1.69
13624--13674
19
2.7
19
84
0
75
9
1
45
43
1.48
16787--16831
14
3.4
13
88
11
65
37
17
6
37
1.76
24299--24336
15
2.4
16
82
8
51
47
0
47
5
1.24
28216--28255
18
2.2
18
86
4
53
45
5
20
30
1.72
28812--28848
11
3.2
12
88
11
60
8
16
5
70
1.30
31279--31354
29
2.6
29
91
2
125
17
26
17
39
1.91
31488--31563
29
2.6
29
89
2
116
36
17
27
18
1.93
32889--32923
2
17.5
2
100
0
70
51
0
0
48
1.00
33576--34041
53
9.0
53
72
8
368
48
15
9
26
1.75
33629--34068
153
2.9
153
95
0
781
48
15
9
26
1.76
34620--34659
21
1.9
21
85
10
55
70
5
0
25
1.08
36335--36365
11
2.8
11
95
0
53
0
6
3
90
0.55
41633--41771
69
2.0
69
100
0
278
41
10
15
32
1.81
44745--44803
31
2.0
31
83
6
77
37
20
10
32
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46532--46581
16
3.1
16
74
23
50
72
16
12
0
1.13
49056--50159
438
2.5
435
83
6
1298
43
12
13
29
1.82

Tables:   1

The End!