Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023823.1 Corchorus olitorius cultivar O-4 contig23856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20604

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
992--1030
14
2.9
14
84
3
53
71
0
15
12
1.14
12705--13232
42
13.0
41
82
12
396
31
16
16
36
1.91
12703--12871
85
2.0
85
84
9
220
34
16
15
33
1.90
12710--13232
81
6.4
82
77
14
410
30
16
16
36
1.91
12711--13233
123
4.3
125
77
15
370
30
16
16
36
1.91
14156--14188
2
16.5
2
100
0
66
48
0
0
51
1.00
18559--18637
37
2.1
38
90
2
124
30
16
15
37
1.89
18694--18786
39
2.4
39
90
0
150
26
21
15
36
1.93
18791--19282
39
12.9
39
69
12
245
24
18
18
39
1.92
19111--19279
77
2.2
77
80
4
189
23
18
20
37
1.94
19240--19360
64
1.9
64
80
0
143
21
16
16
45
1.85
19292--19393
39
2.6
39
84
3
134
21
11
19
47
1.81

Tables:   1

The End!