Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023824.1 Corchorus olitorius cultivar O-4 contig23857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16438

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1797--1835
14
2.9
14
84
3
53
71
0
15
12
1.14
4966--4990
13
1.9
13
100
0
50
56
8
0
36
1.29
7605--7644
21
2.0
20
90
5
62
32
12
22
32
1.91
8919--9010
45
2.0
47
82
8
116
39
8
3
48
1.50
10582--10634
22
2.4
21
75
6
52
75
13
7
3
1.15
14634--14665
4
8.0
4
92
0
55
3
0
21
75
0.95
14992--15052
32
1.9
31
83
3
77
37
31
18
13
1.88
15381--15437
22
2.7
21
76
10
53
38
3
0
57
1.16
15423--15477
22
2.5
22
77
13
60
43
7
1
47
1.41

Tables:   1

The End!