Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023825.1 Corchorus olitorius cultivar O-4 contig23858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34586

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
441--487
22
2.1
22
88
0
67
42
14
6
36
1.72
6883--6971
42
2.1
42
97
0
169
19
14
23
42
1.88
12830--12870
19
2.2
19
95
0
73
29
0
0
70
0.87
17409--17484
16
4.8
16
80
6
82
42
39
11
6
1.68
18439--18588
67
2.2
67
97
0
291
49
11
12
26
1.74
19157--19210
15
3.4
16
80
14
58
42
38
12
5
1.67
20930--20959
11
2.7
11
100
0
60
20
26
26
26
1.99
25744--25829
27
3.1
27
90
6
120
17
17
24
40
1.90
27967--28290
178
1.8
178
84
4
447
36
12
16
34
1.87
28783--28810
1
28.0
1
100
0
56
0
0
0
100
0.00
30896--30932
18
2.1
18
90
5
58
37
10
8
43
1.69
32384--32423
14
2.7
16
77
18
50
0
25
7
67
1.16

Tables:   1

The End!